PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00008177-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family M-type_MADS
Protein Properties Length: 190aa    MW: 21012.4 Da    PI: 10.6197
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00008177-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.5e-211155347
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                        +++ s rqvtfskRrng++KKA+EL +LC+aevav+ fs+ gk +
  WALNUT_00008177-RA 11 VKDGSSRQVTFSKRRNGVFKKANELATLCGAEVAVVAFSPGGKPF 55
                        578899**********************************99855 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.44E-26175IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.581161IPR002100Transcription factor, MADS-box
SMARTSM004329.6E-32160IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-19323IPR002100Transcription factor, MADS-box
PfamPF003194.9E-241257IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MGRRKIEMAM VKDGSSRQVT FSKRRNGVFK KANELATLCG AEVAVVAFSP GGKPFSFGQP  60
SVGAVSDRFL HRDQRKPNHG KTVVGSSKDG AKVSILTQQL NELLKQLYDE KKRGEMLEKA  120
KEKSGYKAPI INEMGLQELG ELKGSLERLR EDIKARVNEM EASSSLLLLA KKPVHESERP  180
VAKKVAKSYI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007213148.15e-66hypothetical protein PRUPE_ppa024816mg
TrEMBLM5WKM55e-66M5WKM5_PRUPE; Uncharacterized protein
STRINGPOPTR_0004s13600.15e-59(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-38AGAMOUS-like 62